WSInfer command line walk through
Jakub walks you through WSInfer. First we install the software, then we run it on a whole slide images, and finally we visualize the results.
Documentation: https://wsinfer.readthedocs.io/en/latest/
GitHub repo: https://github.com/SBU-BMI/wsinfer
QuPath WSInfer Extension: https://qupath.readthedocs.io/en/latest/do...
If you need sample whole slide images, see https://openslide.cs.cmu.edu/download/open...
00:00 - Intro
00:45 - Install PyTorch
04:40 - Check PyTorch installation
06:12 - Install WSInfer
07:03 - Overview of WSInfer command line
09:45 - WSInfer Model Zoo
10:17 - Run breast tumor model!
12:30 - Discuss outputs
16:00 - Visualize in QuPath
19:00 - Wrapping up / Getting help
Fantastic music: • Jazz music ROYALTY FREE Background Cafe Mu...