Getting Started with Big Data Genomics Using Scala and IntelliJ
Up and Running with Big Data Genomics
This short (around six minutes) screencast is meant to get someone new to Scala, IntelliJ, and the Big Data Genomics stack up and running with a configured development environment.
We'll walk you through downloading the appropriate JDK, IntelliJ IDE, and plugings. Then we will set up the project (using ADAM as the example), generating sources, packaging the application, and building the project. We'll cover running tests, as well as some basic exploration and code navigation using the IDE.
Note, if you have trouble using maven package in the command line, you may want to add the following to your .bashrc, or at least export these environment variables before running mvn package:
export MAVEN_OPTS="-Xmx512m -XX:MaxPermSize=128M"
export JAVA_HOME=`/usr/libexec/java_home -v 1.7`
Links
00:00:14 Oracle JDK 7
00:00:28 IntelliJ IDE
00:00:43 ADAM Github Repository