Analyzing Genome Scale Methylome Data Sets GSE44350)
GSE44350 is composed 3 sub-series. Two are based on Illumina human methylation beadchips, 27,000 and 450,000 methylation sites respectively. 24 samples were measured with both and you can check the reproducibility by the real data. High density platform covers whole genome comprehensively, but the huge number of sites makes data analysis slow and difficult. This demo shows how to avoid such a problem.
The last one is for a study of mouse methylome, measured by Illumina HiSeq 2000. The demo shows how to find regions you have to focus, and then look closer.
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