P&S Mobile and Accelerating Genomics - Lecture 13: RawHash and TargetCall (Spring 2023)
Project & Seminar, ETH Zürich, Spring 2023
Genome Sequencing on Mobile Devices (https://safari.ethz.ch/projects_and_s...)
Accelerating Genome Analysis with FPGAs, GPUs, and New Execution Paradigms (https://safari.ethz.ch/projects_and_s...)
Lecture 13a: RawHash: Enabling Fast and Accurate Real-Time Analysis of Raw Nanopore Signals for Large Genomes
Lecture 13b: TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering
Lecturers: Can Firtina, Meryem Banu Cavlak
Date: June 1, 2023
RawHash paper (pdf): https://arxiv.org/pdf/2301.09200
TargetCall paper (pdf): https://www.biorxiv.org/content/10.11...
Lecture 13a Slides (pptx): https://safari.ethz.ch/projects_and_s...
Lecture 13a Slides (pdf): https://safari.ethz.ch/projects_and_s...
Lecture 13b Slides (pptx): https://safari.ethz.ch/projects_and_s...
Lecture 13b Slides (pdf): https://safari.ethz.ch/projects_and_s...
Recommended Reading:
====================
Intelligent Architectures for Intelligent Computing Systems
https://people.inf.ethz.ch/omutlu/pub...
A Modern Primer on Processing in Memory
https://people.inf.ethz.ch/omutlu/pub...
RowHammer: A Retrospective
https://people.inf.ethz.ch/omutlu/pub...
RECOMMENDED LECTURE VIDEOS & PLAYLISTS:
========================================
Computer Architecture Fall 2021 Lectures Playlist:
• Computer Architecture - Lecture 1: In...
Digital Design and Computer Architecture Spring 2021 Livestream Lectures Playlist:
• Onur Mutlu - Digital Design and Compu...
Featured Lectures:
• Onur Mutlu - Supercomputing Frontiers...
Interview with Professor Onur Mutlu:
• Interview with Onur Mutlu @ ISCA 2019...
The Story of RowHammer Lecture:
• The Story of Rowhammer - Secure Hardw...
Accelerating Genome Analysis Lecture:
• Accelerating Genome Analysis: A Prime...
Memory-Centric Computing Systems Tutorial at IEDM 2021:
• IEDM 2020 Tutorial: Memory-Centric Co...
Intelligent Architectures for Intelligent Machines Lecture:
• Onur Mutlu - Invited Talk @ Seoul Nat...
Computer Architecture Fall 2020 Lectures Playlist:
• Computer Architecture - Lecture 1: In...
Digital Design and Computer Architecture Spring 2020 Lectures Playlist:
• Digital Design & Computer Architectur...
Public Lectures by Onur Mutlu, Playlist:
• Onur Mutlu - Future Computing Archite...
Computer Architecture at Carnegie Mellon Spring 2015 Lectures Playlist:
• Lecture 1. Introduction and Basics - ...
Rethinking Memory System Design Lecture @stanfordonline :
• Stanford Seminar - Rethinking Memory ...