Local and server-side 3D animation of microscopy data with 3Dscript
In-depth introduction to 3Dscript for the I2K 2022 https://www.i2kconference.org/.
00:00:00 Introduction
00:00:35 User interface walk-through
00:18:35 Creating animations
00:51:01 Multi-channel / Multi-panel rendering
00:53:20 Batch version / Macros
00:56:51 Render remotely from Fiji
01:09:01 Render from the OMERO.web interface
01:16:18 Resources
This workshop aims to give an in-depth introduction to 3Dscript[1]. 3Dscript’s features will be demonstrated by walking through its graphical user interface. Participants will learn step-by-step how to assemble animations, using 3Dscript’s animation language, with a particular focus on details such as the order of transformations. We will discuss means to create animations not only reproducibly, but also how to batch render multiple datasets in a way that allows direct scientific comparison. Finally, participants will be introduced to the new OMERO.3Dscript[2] web app that provides a way to render 3D animations fully server-side, directly on the web interface of an OMERO server.
[1] Schmid et al. 3Dscript: Animating 3D/4D microscopy data using a natural-language-based syntax. Nat Methods (2019) https://www.nature.com/articles/s4159...
[2] Schmid et al. 3Dscript.server: true server-side 3D animation of microscopy images using a natural language-based syntax. Bioinformatics (2021) https://academic.oup.com/bioinformati...