Approaches Towards Processing and Interpreting Complex Image Datasets |
Thank you for joining us on the Bio-protocol Ambassador Roundtable webinar on Approaches Towards Processing and Interpreting Complex Image Datasets.
Explore the timestamps below to find exactly what you are looking for in the video!
⏰ Timestamps
0:00 Introduction & About Speaker Elisabeth Kugler, Ph.D.
3:12 What is biomedical image analysis?
5:45 Preclinical model imaging and genetics
6:42 Translating images into knowledge
7:35 Why do we need cross-disciplinarity?
8:50 Rubbish in = rubbish out, Biology edition
10:42 Rubbish in = rubbish out, Microscopy edition
11:42 Sampling frequency, signal decay, calibration issues in microscopy
14:03 Analysis without validation means nothing
17:05 Basics of Fiji/ImageJ
20:05 Resources/Tools for Biomedical Image Analysis
Q&A session
21:30 Elaboration on understanding data and the need for collaboration or outsourcing
25:40 General vs Specialist in microscopy
28:00 Guidance to microscopy newbies
32:55 About Speaker, Jonas Hartmann, Ph.D.
33:53 Exploring animal development with integrative image and data analysis
36:40 Aims for image analysis: Quantify, integrate and interpret
37:15 Quantify: Unstructured and structured data
39:00 Quantify: Single-cell segmentation
40:00 Quantify: Feature engineering/embedding
42:30 Integration of imaging data
48:00 Interpretation of imaging data: modelling- based and simulation-based inference
53:00 Tools for microscopy image interpretation/ visualization
Q&A session
57:00 Applicability of ImageJ (or other tools) for 3D image analysis for C. elegans
59:20 Machine learning and deep learning in biological microscopic imaging
1:04:45 Software vs code-based approaches for image segmentation
1:08:40 Discussion on reproducibility of microscopy data
1:15:30 Elaboration on context mapping
1:21:10 How should experimenters justify their choice of software or approach over a new or different one?
1:28:37 Concluding remarks
🥼About Bio-protocol Ambassador Roundtable:
Bio-protocol is an online peer-reviewed protocol journal curating and hosting high-quality, open-access, step-by-step protocols across the life sciences. Our motto is to improve research reproducibility and through our ambassador roundtable webinar program for young researchers, we aim to openly discuss protocols, ideas and cutting-edge life science technologies.
~This webinar recording is on complex image dataset processing and interpretation.
#webinar #science #research #imaging #microscope #dataset #datascience
Speakers:
Elisabeth Kugler, Ph.D., Director, Zeeks- Arts for Geeks
Jonas Hartmann, Ph.D., University College LondonName, designation
Organizers:
Meet the Bio-protocol Ambassadors at https://bio-protocol.org/en/ambassado...
Amira Hanafy, Ph.D., University Hospital Bonn (Moderator)
Jack Hopkins, Ph.D., University College London
Vaishnavi Dandavate, Weizmann Institute of Science
Xuxi Zhou, Ohio University
If this video was helpful, don't forget to like, subscribe, and share this video!
For inquiries, contact us at: [email protected]
Follow Bio-protocol!
🌿 Twitter ➡ / bioprotocolbyte
🔬 LinkedIn ➡ / bio-protocol