Imputation of missing data using Beagle software.
Beagle is a Java-based software for phasing genotypes and for imputing ungenotyped markers (i.e., missing data in the SNP matrix). In this tutorial, i am using TutorialData from TASSEL software. Moreover, TASSEL software can also impute missing data.
TASSEL imputation tutorial:
• Genome-wide Association Study (GWAS) analy...
For detailed information about the imputation of missing data, please visit Beagle software website.