Cleaning genotype data for diversity outbred mice
Re-recording of a talk I gave at the Jackson Laboratory in Bar Harbor, Maine, on 17 Oct 2018. I gave an earlier version of this at the Complex Trait Community meeting in Glasgow in June, 2018.
Slides as html: https://kbroman.org/Talk_JAX2018
Slides as pdf: https://kbroman.org/Talk_JAX2018/jax2...
Slides source (but without the data): https://github.com/kbroman/Talk_JAX2018
Related paper: Broman KW, Gatti DM, Svenson KL, Sen Ś, Churchill GA (2019) Cleaning genotype data from Diversity Outbred mice. G3 (Bethesda) 9:1571-1579 https://doi.org/10.1534/g3.119.400165
Related paper on microbiome mix-ups and mixtures: Lobo AK, Traeger LL, Keller MP, Attie AD, Rey FE, Broman KW (2019) Identification of sample mix-ups and mixtures in microbiome data in Diversity Outbred mice. bioRxiv doi:10.1101/529040 https://doi.org/10.1101/529040