Episode 38: Seqera Pipelines & Seqera Containers
Evan Floden (CEO and co-founder of Seqera) joins Phil Ewels (Product Manager for OSS at Seqera) to talk about two of the big announcements at the recent Nextflow Summit Boston 2024 - Seqera Pipelines and Seqera Containers.
We dive into what these two new community offerings are, why we built them and how they work.
Links:
https://seqera.io/pipelines/
https://seqera.io/containers/
Blog post: https://seqera.io/blog/introducing-se...
Nextflow Summit Boston 2024: https://summit.nextflow.io/2024/bosto...
Summit YouTube playlist: • Nextflow Summit 2024 - Boston
Nextflow 24.04 blog post: https://nextflow.io/blog/2024/nextflo...
Timeline:
00:00 - Introduction
00:37 - Nextflow Summit Boston 2024
01:14 - Summit talks available online
01:57 - Summit announcements
04:32 - Seqera Pipelines - motivations
05:59 - Seqera Pipelines - first look
06:48 - Testing requirements for community pipelines
10:05 - How we tested pipelines
11:53 - SRA-Explorer tangent
12:34 - Seqera Pipelines - live demo
16:14 - Getting Nextflow launch commands
19:12 - Seqera Containers - intro
24:03 - Seqera Containers - live demo
27:13 - Containers - ARM cpu arch builds
28:33 - Singularity containers
29:09 - Wave CLI
31:19 - Nextflow with Seqera Containers
33:22 - Seqera Containers - future usage
35:09 - Where to read more
36:53 - Thank you to the community