STRUCTURE Harvester - Best K value - UPDATED after website malfunction
The #STRUCTURE Harvester is one of the most popular methods how to determine the optimal number of subpopulations or groups in your data.
The website is not reachable for a longer time now, but the same analyses could be run via #python scripts, as shown in this video.
Links from the video
STRUCTURE Harvester GitHub: https://github.com/dentearl/structure...
Google Groups entry: https://groups.google.com/g/structure...
Paper for the interpretation of results: https://link.springer.com/article/10....
STRUCTURE tutorial: • Structure tutorial
Can Neogen help with your project work?
The Neogen team is ready to assist with any genotyping or sequencing project, whether it's current or in the planning stages. Simply fill out the form with your query and use the GENOMICSBOOTCAMP discount: https://info.neogen.com/4cW0lx3
Parts of the video
0:00 - 4:54 - Structure Harvester intro
4:55 - 10:36 - Repeated iterative STRUCTURE runs
10:37 - 14:14 - Info about NEOGEN (with discount code)
14:15 - 22:24 - Structure Harvester run
22:25 - 26:31 - Structure Harvester results