Samples and Amplicons in KBase - 11 November 2021
In this installment of the Samples Webinar Series, Pamela Weisenhorn and Kathleen Beilsmith, both of Argonne National Lab, demonstrate how to upload amplicon matrices, link them to samples, and perform analysis.
0:00 Introduction
x:xx Amplicon Reporting Format
6:44 Analysis Functionality
8:23 Narrative Walk-through
9:32 Importing Samples
10:46 Importing Amplicon Matrix
15:13 Transform Matrix
17:26 Analysis Use Case 1: Classify rRNA with RDP Classifier and show with bar plots
20:04 Analysis Use Case 2: Associations between compositions of communities and environments
26:00 Analysis Use Case 3: Prediction of functional potential of a community
27:09 Closing remarks