Run complex HCS Pipelines with CellProfiler with Apache Airflow
Let's demonstrate CellProfiler Illumination Correction and Analysis Pipelines with Apache Airflow.
I hope this content gives you some ideas of how you can create robust pipelines for analyzing your HCS Data.
Thanks to the Broad Institute and the Broad BioImage Benchmark Repository! We will use the BBBC021 Human MCF7 cells – compound-profiling experiment dataset available here - https://data.broadinstitute.org/bbbc/....
The post + code are both coming soon!
If you have any questions or are interested in my consulting services please reach out to me at [email protected] or check out https://www.dabbleofdevops.com
Citations -
"We used image set BBBC021v1 [Caie et al., Molecular Cancer Therapeutics, 2010], available from the Broad Bioimage Benchmark Collection [Ljosa et al., Nature Methods, 2012]."