Fast scripting with ImgLib2 in Fiji's Script Editor
Albert Cardona, MRC LMB & University of Cambridge
I2K 2022 | Workshops #3 (pre-sessions) | May 9th
You will learn how to explore the many capabilities of powerful image processing libraries such as ImgLib2, from the comfort of the Fiji Script Editor. This tutorial will use jython (python for java) and the new Script Editor features for library API discovery using code autocompletion. The examples we'll touch on will showcase the ability of ImgLib2 to represent entire collections of image files as a single 3D and 4D volume, and how to virtually slice such volumes for localized visualization and analysis.
Pre-workshop instructions:
1. Install Fiji https://fiji.sc
2. Ensure Fiji is up to date by running "Help - Update" a day or two before the workshop.
Keywords: Fiji, Script Editor, python, ImgLib2, 3D, 4D