Interpreting image-based profiles: single cell retrieval and visualization using Google Colab
This video is a demonstration of how to run a notebook in Google Colab to process image-based profiles and retrieve representative single cells for visualization.
Helpful links:
Publication that contains the instructions (Basic Protocol 2): “Interpreting Image-based Profiles using Similarity Clustering and Single-Cell Visualization” https://currentprotocols.onlinelibrar...
GitHub repository: https://github.com/ciminilab/2023_Gar...
Previous training "The beginner's guide to morphological profiling (Morphological profiling, part 1)": • The beginner's guide to morphological prof...
Previous training "Practical exploration of morphological profiling data (Morphological profiling, part 2)": • Practical exploration of morphological pro...